向 /etc/apt/sources.list 中加入: deb http://ftp.ctex.org/mirrors/CRAN/bin/linux/Ubuntu maverick/ Secure apt The Ubuntu archives on CRAN are signed with the key of Michael Rutter marutter@gmail.com with key ID E084DAB9. You can fetch this k
向 /etc/apt/sources.list 中加入:
deb http://ftp.ctex.org/mirrors/CRAN/bin/linux/Ubuntu maverick/
Secure apt
The Ubuntu archives on CRAN are signed with the key of "Michael Rutter <marutter@gmail.com>" with key ID E084DAB9. You can fetch this key with
gpg --keyserver keyserver.ubuntu.com --recv-key E084DAB9
and then feed it to apt-key with
gpg -a --export E084DAB9 | sudo apt-key add -
安装完整的R system, 使用
sudo apt-get update
sudo apt-get install r-base
管理和维护R包
The R packages part of the Ubuntu r-base and r-recommended packages are installed into the directory /usr/lib/R/library.
The other r-cran-* packages shipped with Ubuntu are installed into the directory /usr/lib/R/site-library.
These can be updated using apt-get with
sudo apt-get update
sudo apt-get upgrade
整体分为三部分进行管理:
1. R本身和一些库用 apt-get 进行更新
2. 官方推荐包默认存在于 /usr/lib/R/library 可用管理员权限下的 update.packages() 更新
3. 用户安装包默认存在于 /usr/lib/R/site-library 可用管理员权限下的 update.packages() 更新
一旦用非管理员的用户去装包, 会装到另外一个新文件夹中. 因为对以上目录没有写权限.
一旦用非管理员权限装包, 会装到另外一个新文件夹中. 因为对以上目录没有写权限. 用管理员权限会默认装到 /usr/local/lib/R/site-library 里. 更新的时候亦然.
sudo gedit /etc/R/Rprofile.site # 修改默认CRAN镜像
手工安装依赖了特别库的包
安装程序包'Cairo'时退出狀態的值不为0
安装程序包'rgl'时退出狀態的值不为0
安装程序包'XML'时退出狀態的值不为0:
安装程序包'RCurl'时退出狀態的值不为0
安装程序包'cairoDevice'时退出狀態的值不为0
安装程序包'fftw'时退出狀態的值不为0
安装程序包'rcdd'时退出狀態的值不为0
安装程序包'rgdal'时退出狀態的值不为0
依赖rgl引起的:
installation of package 'ks' had non-zero exit status
installation of package 'feature' had non-zero exit status
installation of package 'flowCore' had non-zero exit status
installation of package 'flowViz' had non-zero exit status
安装Cairo:
sudo apt-get install libcairo2-dev libxt-dev
然后install.packages("Cairo")即可
安装cairoDevice:
sudo apt-get install r-cran-cairoDevice
安装rgl包:
sudo apt-get install r-cran-rgl
安装fftw包:
sudo apt-get install libfftw3-dev
然后install.packages("fftw")即可
安装rcdd包:
sudo apt-get install libgmp3-dev
然后install.packages("rcdd")即可
安装rgdal包:
sudo apt-get install libgdal-dev libproj-dev
然后install.packages("rgdal")即可
安装XML包:
sudo apt-get install libxml++2.6-dev
然后install.packages("XML")即可
装好以上就能装RCurl了, 初步猜测可能是依赖libxml导致的.
安装rimages包:
sudo apt-get install fftw-dev fftw2
然后install.packages("rimage")即可
安装RKWard daily版
sudo add-apt-repository ppa:rkward-devel/rkward-dailys
然后
sudo apt-get update
sudo apt-get install rkward
sudo apt-get dist-upgrade
即可安装RKWard daily版.
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